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Prevalence and persistence of foreign DNA beneath fingernails.

FSI Genetics, 2012

Study Design

Addressed Question

analysis of presence and persistence of foreign DNA beneath the fingernails after scratching

Activity Context

Scratching

Category

PersistencePrimary Deposit

Specifications

ContactPersistence with Regular ActivitiesPersistence with Time

Variables of Interest

scratching scenariodelay before sampling

Stringency of Control

Controlled

Number of Individuals

10-20

Replicates per Individual and Condition

1

Nucleic Acid

DNA

Bodily Origin

fingernailsskin (forearms)

Depositor & Contact

Depositor Characteristics

paired male and female volunteers

Criteria for Shedder Status

N/A

Previous Activities

handwashing with water, soap and nailbrush

Contact Scenario

handwashing - control samples - scratching scenario - immediately after scratching sample - delay - end of day sample

Primary Substrate

Primary Substrate Type

body part: under fingernails

Primary Substrate Material

Skin and Nail

Deposit

scratching superficially for 10 min, scratching vigorously 30x

Delay

N/A

Secondary Substrate

Secondary Substrate Type

N/A

Secondary Substrate Material

N/A

Secondary Substrate Contact

N/A

Further Transfer

N/A

Sampling

Background DNA on Sampled Surface

Negative (Confirmed)

Sampling Time

direct and delayed 5-6h

Persistence

5-6 h regular activities (recorded)

Sampling Method

fingernail scrapings as control samples, swabbings of fingernail clippings after scratching

Sampling Area

pooling of all samples from one hand

Laboratory Analysis

Extraction

modified SDS/proteinase K lysis with organic extraction and microfiltration

DNA Quantification

QuantiBlot Human DNA quantitation kit, ABI Prism 7900 sequence detection system

Input for Profiling

1 ng (or 6 µl) DNA template, only samples >240 pg profiled

Profiling

AmpFlSTR Profiler system or AmpFlSTR Profiler Plus system, ABI Prism 377 DNA sequencer, Genescan and Genotyper software, threshold: 50 rfu, stutter peaks: -4bp, <15%

Reference Samples

taken from participants and all laboratory staff members

Profile Interpretation and Mixture Analysis

according to CFS interpretation protocols, subtraction of donor profile for mixture interpretation

RNA Data Interpretation

N/A

Results

DNA Quantity

N/A

Profile Quality

better quality foreign DNA profiles in 40% of samples after vigorous scratching

Parameter Used for Comparison

number of foreign STR loci detected (cutoff: more or less than 5 out of 9), origin of foreign DNA loc

Summary of Results

control samples after washing not entirely negative, foreign DNA in 13% of cases (attributable to husband in one case); less vigorous scratching only leads to foreign DNA detected at 1-2 STR loci in 30% of cases whereas vigorous scratching results in foreign DNA in 3-9 STR loci in 40% of samples (scratched person not excluded); no significant influence from length of fingernails; after 5-6h, foreign DNA detected in only 7 % (6 and 8 STR loci, scratched partner not excluded) -> persistence low

Raised Questions

does a discriminating and good quality DNA profile under the fingernails require contact with body fluids other than skin? Is more than one casual contact required for fingernails to acquire and retain foreign DNA?

Cautionary Remarks

fingernail scrapings and clippings comparable?; suitability of foreign DNA profiles for detection of foreign source not assessed; relative contribution of donor and scratched person n.s.; maximum chance transfer due to precleaning; factors that might have lead to prolonged persistence in the two cases n.a.