Prevalence and persistence of foreign DNA beneath fingernails.
FSI Genetics, 2012
Authors
Journal
FSI Genetics
Study Design
Addressed Question
analysis of presence and persistence of foreign DNA beneath the fingernails after scratching
Activity Context
Category
Specifications
Variables of Interest
Stringency of Control
Number of Individuals
10-20
Replicates per Individual and Condition
1
Nucleic Acid
Bodily Origin
Depositor & Contact
Depositor Characteristics
paired male and female volunteers
Criteria for Shedder Status
N/A
Previous Activities
handwashing with water, soap and nailbrush
Contact Scenario
handwashing - control samples - scratching scenario - immediately after scratching sample - delay - end of day sample
Primary Substrate
Primary Substrate Type
body part: under fingernails
Primary Substrate Material
Deposit
scratching superficially for 10 min, scratching vigorously 30x
Delay
N/A
Secondary Substrate
Secondary Substrate Type
N/A
Secondary Substrate Material
N/A
Secondary Substrate Contact
N/A
Further Transfer
N/A
Sampling
Background DNA on Sampled Surface
Sampling Time
direct and delayed 5-6h
Persistence
5-6 h regular activities (recorded)
Sampling Method
fingernail scrapings as control samples, swabbings of fingernail clippings after scratching
Sampling Area
pooling of all samples from one hand
Laboratory Analysis
Extraction
modified SDS/proteinase K lysis with organic extraction and microfiltration
DNA Quantification
QuantiBlot Human DNA quantitation kit, ABI Prism 7900 sequence detection system
Input for Profiling
1 ng (or 6 µl) DNA template, only samples >240 pg profiled
Profiling
AmpFlSTR Profiler system or AmpFlSTR Profiler Plus system, ABI Prism 377 DNA sequencer, Genescan and Genotyper software, threshold: 50 rfu, stutter peaks: -4bp, <15%
Reference Samples
taken from participants and all laboratory staff members
Profile Interpretation and Mixture Analysis
according to CFS interpretation protocols, subtraction of donor profile for mixture interpretation
RNA Data Interpretation
N/A
Results
DNA Quantity
N/A
Profile Quality
better quality foreign DNA profiles in 40% of samples after vigorous scratching
Parameter Used for Comparison
number of foreign STR loci detected (cutoff: more or less than 5 out of 9), origin of foreign DNA loc
Summary of Results
control samples after washing not entirely negative, foreign DNA in 13% of cases (attributable to husband in one case); less vigorous scratching only leads to foreign DNA detected at 1-2 STR loci in 30% of cases whereas vigorous scratching results in foreign DNA in 3-9 STR loci in 40% of samples (scratched person not excluded); no significant influence from length of fingernails; after 5-6h, foreign DNA detected in only 7 % (6 and 8 STR loci, scratched partner not excluded) -> persistence low
Raised Questions
does a discriminating and good quality DNA profile under the fingernails require contact with body fluids other than skin? Is more than one casual contact required for fingernails to acquire and retain foreign DNA?
Cautionary Remarks
fingernail scrapings and clippings comparable?; suitability of foreign DNA profiles for detection of foreign source not assessed; relative contribution of donor and scratched person n.s.; maximum chance transfer due to precleaning; factors that might have lead to prolonged persistence in the two cases n.a.