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Investigation of secondary DNA transfer of skin cells under controlled test conditions.

Legal Medicine, 2010

Study Design

Addressed Question

factors influencing DNA transfer rates in skin cell deposits

Activity Context

None

Category

Transfer Scenario

Specifications

Bodily OriginContactSurface

Variables of Interest

freshness of depositnature of primary and secondary substratemanner of contact

Stringency of Control

Controlled

Number of Individuals

1

Replicates per Individual and Condition

6

Nucleic Acid

DNA

Bodily Origin

skin (hands)

Depositor & Contact

Depositor Characteristics

good shedder

Criteria for Shedder Status

N/A

Previous Activities

N/A

Contact Scenario

primary deposit - (drying time) - grid stencil allowing specified contact between primary and secondary substrate

Primary Substrate

Primary Substrate Type

soft porous cotton, hard non-porous plastic

Primary Substrate Material

CottonPlastic

Deposit

rubbing 10-15s

Delay

N/A

Secondary Substrate

Secondary Substrate Type

soft porous cotton fabric, hard non-porous plastic

Secondary Substrate Material

CottonPlastic

Secondary Substrate Contact

passive 60s, pressure (1kg) 60s, friction pressure (1kg) 60s

Further Transfer

N/A

Sampling

Background DNA on Sampled Surface

Negative (Confirmed)

Sampling Time

direct

Persistence

N/A

Sampling Method

direct processing of substrates

Sampling Area

6.5x4.5cm^2 deposit areas

Laboratory Analysis

Extraction

5% Chelex and Amicon Ultra (Millipore)

DNA Quantification

Quantifiler Human DNA Quantification kit, ABI PRISM 7500 SDS Instrument

Input for Profiling

N/A

Profiling

AmpFlSTR Profiler Plus, ABI PRISM 3100 Genetic Analyzer, GeneMapper ID software (Applied Biosystems)

Reference Samples

taken from depositor

Profile Interpretation and Mixture Analysis

genotyping samples with the largest amount of DNA from each combination of variables to confirm absence of contamination

RNA Data Interpretation

N/A

Results

DNA Quantity

initial deposit: 11.68/6.12 ng on cotton and 0.396/0.482 ng on plastic (fresh/dried)

Profile Quality

Full profiles from depositor, no contaminating DNA (degradation n.a. in every case)

Parameter Used for Comparison

% transfer = DNA transferred (ng)/(DNA on primary substrate + DNA transferred (ng))

Summary of Results

initial deposit varies strongly, transfer rate are not significantly dependent on initial deposit (insignificant difference in transfer rate between largest and smallest deposits within each set of replicates); primary deposit is higher on porous substrates; plastic as primary and cotton as secondary substrates increase transfer; transfer rates approx. double from passive to pressure to friction contact; freshness of deposit does not significantly influence transfer rate; skin cells behave significantly different than other biological substrates (Goray et al (2010)): higher transfer rate from cotton, lower transfer rate from plastic;

Raised Questions

assessment of real amount of deposited DNA? Reason for large deviations in transfer rates (composition of deposit, variations in the extraction/concentration process)?

Cautionary Remarks

variable extraction efficiencies between substrates not taken into consideration