DNA transfer during laundering may yield complete genetic profiles.
FSI Genetics, 2016
Study Design
Addressed Question
background levels of DNA on children's underwear
Activity Context
Category
Specifications
Variables of Interest
Stringency of Control
Number of Individuals
11
Replicates per Individual and Condition
1-2
Nucleic Acid
Bodily Origin
Depositor & Contact
Depositor Characteristics
female children's underwear from families with no history of intrafamilial sexual abuse
Criteria for Shedder Status
N/A
Previous Activities
N/A
Contact Scenario
regular wearing and laundering of underwear for min. 1/2 year - washing and drying - sampling
Primary Substrate
Primary Substrate Type
fabric underwear
Primary Substrate Material
N/A
Deposit
wearing over a period of min. 6 months
Delay
N/A
Secondary Substrate
Secondary Substrate Type
N/A
Secondary Substrate Material
N/A
Secondary Substrate Contact
washing machine, normal washing
Further Transfer
N/A
Sampling
Background DNA on Sampled Surface
Sampling Time
direct/delayed
Persistence
N/A
Sampling Method
swabbing and cutting
Sampling Area
swabbing 40 cm^2, cuttings 6.25 cm^2, 6-7 different areas per piece of underwear and sampling method
Laboratory Analysis
Extraction
differential extraction DNA IQ magnetic beads system (Promega)
DNA Quantification
Quantifiler Duo DNA Quantification kit (AB), 7500 Real-Time PCR
Input for Profiling
set volume 15 µl (min 0.008 ng/µl for epithelia fraction, 0.001 ng/µl for spermatozoa fraction)
Profiling
AmpFlSTR Identifiler Plus PCR Amplification kit 28 cycles, ABI PRISM 3130xI Genetic Analyzer, GeneMapper ID software v.3.2, AT: 50rfu, ST: 200 rfu
Reference Samples
taken from all family and household members
Profile Interpretation and Mixture Analysis
comparison to reference profiles from family members and percentage contribution to DNA mixtures (n.s. what this contribution is based on)
RNA Data Interpretation
N/A
Results
DNA Quantity
<amplification threshold for swabbings, cuttings up to 6.7 ng
Profile Quality
single source profiles (13%), multiple family member mixtures (52%), or uninterpretable mixtures (11 %)
Parameter Used for Comparison
% contribution from family members in epithelial and sperm fraction
Summary of Results
Seminal fluid tests (AP, PSA) all negative; low DNA yield from sperm fraction (only partial profiles from father in only 4 % of samples); mixtures from different family members in epithelial fractions with the mother being most prominent and father present up to 30% (in non-vasectomized families), father more prominent in non-vasectomized families; visible sperm cells from father observed in two samples
Raised Questions
possibility of detecting father's sperm in the epithelial fraction after washing due to the weakening of the sperm cells in the washing process
Cautionary Remarks
hypothesis on the origin of cells (e.g. mainly vaginal secretions and semen) not experimentally confirmed -> e.g. high contribution from mother could also arise from the fact that mother does most of the laundering (and dressing for younger children); missing information: how was mixture analyzed, how is % genetic contribution defined?