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DNA profiles from fingermarks

BioTechniques, 2014

Study Design

Addressed Question

proof-of-principle study for the generation of STR-profiles from fingermarks by direct PCR

Activity Context

None

Category

Recovery

Specifications

Direct PCRExtractionPrevious ActivitiesSampling

Variables of Interest

extraction methodprofiling methodtime since handwashing

Stringency of Control

Controlled

Number of Individuals

34

Replicates per Individual and Condition

1-2

Nucleic Acid

DNA

Bodily Origin

skin (fingers)

Depositor & Contact

Depositor Characteristics

good shedders for immediately after handwashing and DNA IQ extraction experiment

Criteria for Shedder Status

consistently generating informative DNA profiles from fingermarks 15 min after handwashing

Previous Activities

handwashing, (15 min delay, activities n.s.)

Contact Scenario

handwashing - (15 min delay) - fingermark deposit

Primary Substrate

Primary Substrate Type

sterile plastic slide

Primary Substrate Material

Plastic

Deposit

15s medium pressure deposit

Delay

N/A

Secondary Substrate

Secondary Substrate Type

N/A

Secondary Substrate Material

N/A

Secondary Substrate Contact

N/A

Further Transfer

N/A

Sampling

Background DNA on Sampled Surface

Negative (Assumed)

Sampling Time

direct

Persistence

N/A

Sampling Method

Nylon FLOQswab, double swabbing premoistened with 2 µl 0.1% Triton X preheated to 50°C

Sampling Area

fingermark area

Laboratory Analysis

Extraction

directPCR from the swabs

DNA Quantification

N/A

Input for Profiling

2 mm^2 portion of the swabs

Profiling

AmpFlSTR Profiler Plus kit or AmpFlSTR NGM Select PCR amplification kit (+BSA, DMSO), 3130xl Genetic analyzer, GeneMapper ID software v3.2.1, threshold: 30 rfu

Reference Samples

buccal swabs taken from depositors

Profile Interpretation and Mixture Analysis

comparison to reference profiles and determination of successfully amplified donor alleles, informative profile: >12 alleles matching donor

RNA Data Interpretation

N/A

Results

DNA Quantity

N/A

Profile Quality

71 % profiles sufficient for upload in DNA database (>12 alleles)

Parameter Used for Comparison

% alleles detected, number of profiles with >12 alleles detected

Summary of Results

direct PCR without increased PCR cycles number from fingermarks successful in 71 % of cases; NGMSElect and Profiles Plus profiling kit were equally effective in obtaining full or partial PCR profiles; standard DNA IQ extraction method did not results in any DNA profile; single source profiles obtained in 36-40 % of cases, additional alleles supposedly derived from secondary DNA transfer; handwashing with water removes all DNA available on hands;

Raised Questions

limitations of directPCR, effect of chemical enhancement methods

Cautionary Remarks

DNA integrity/profile quality n.a.; mixture contribution and source of foreign alleles n.a.; activities during delay (during which all foreign alleles supposedly have been picked up) n.s.; quantification not attempted