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Assessment of the transfer, persistence, prevalence and recovery of DNA traces from clothing: An inter-laboratory study on worn upper garments

FSI Genetics, 2019

Study Design

Addressed Question

Inter-laboratory study on the composition of background DNA on upper garments worn on working as well as non-working days

Activity Context

None

Category

Background DNARecovery

Specifications

BG on ClothingDNA ProfilingExtractionSampling

Variables of Interest

individualssampling location on clothing itemworking vs. Non-working daymethods applied by analyzing laboratory

Stringency of Control

Reality

Number of Individuals

4 laboratories x 4 individuals

Replicates per Individual and Condition

1

Nucleic Acid

DNA

Bodily Origin

skintrace

Depositor & Contact

Depositor Characteristics

Details on individuals' sex, hair length, living and working conditions provided in supp. Material

Criteria for Shedder Status

N/A

Previous Activities

recorded in questionnaires and taken into consideration when interpreting findings (but n.s.)

Contact Scenario

wearing garments in real-life situations on a working/non-working day - packaging - sampling

Primary Substrate

Primary Substrate Type

upper garments with long sleeves and a close front, details on fabric and fit provided in supp. Material

Primary Substrate Material

CottonFabricPolyester

Deposit

wearing for a whole working/non-working day (wearing times ranging from 6 to 15 h)

Delay

N/A

Secondary Substrate

Secondary Substrate Type

N/A

Secondary Substrate Material

N/A

Secondary Substrate Contact

N/A

Further Transfer

N/A

Sampling

Background DNA on Sampled Surface

Sampled

Sampling Time

delayed

Persistence

packaging clothing item into paper/plastic exhibit bag and submission to laboratory for sampling, duration between wearing and sampling: 0-48 days

Sampling Method

Lab 1: inhouse polyvinyl chloride tape stubs; Lab 2: Minitape (SceneSafe FAST); Lab 3: Minitape (SceneSafe FAST); Lab 4: wet-dry double swabbing (Copan cotton swabs)

Sampling Area

Inner right and left cuff, inner right forearm, inner right armpit, external back, external breast, external collar, internal collar (pictures provided in supp. Material)

Laboratory Analysis

Extraction

Lab 1: QIAamp, robotic, final volume: 100 µl; Lab 2: Chelex, manual, final volume: 100 µl; Lab 3: EZ1 advanced, manual and robotic, final volume: 100 µl; Lab 4: DNA IQ, robotic, final volume: 60 µl

DNA Quantification

Lab 1: in-house ALU assay; Lab 2: Quantifiler HP; Lab 3: Quantifiler Trio; Lab 4: Quantifiler Trio

Input for Profiling

Lab 1: 0.45-0.6 ng desired, max. 8 µl; Lab 2: 0.6-0.7 ng desired, max. 17.5 µl; Lab 3: 1 ng desired, max. 10 µl; Lab 4: 0.5 ng desired, max. 15 µl

Profiling

Lab 1: NGM (29 cycles), 3130xL Analyzer, 50 rfu threshold, no replicates; Lab 2: PowerPlex ESX16fast (30 cycles), 3500 Analyzer, dye-specific analytical threshold, duplicate analysis; Lab 3: NGM SElect (29 cycles), 3500xL Analyzer, 175 rfu threshold, no replicates; Lab 4: PowerPlex 21 (30 cycles), 3500xL Analyzer, 175 rfu threshold, additional amplification if number of contributors unable to be determined

Reference Samples

taken from all participants and, individuals inhabiting the same environments (home and workplace)

Profile Interpretation and Mixture Analysis

collective interpretation performed by Lab 4 using STRmix (v2.4.05) and lab-specific settings (determined with assistance from software developer's)

RNA Data Interpretation

N/A

Results

DNA Quantity

large range of DNA yields from 0 up to >300 ng

Profile Quality

variable profile composition with the wearer detected as a major or single contributor in the majority of profiles

Parameter Used for Comparison

DNA yield (ng), Minimum number of contributors (MNC), profile compositions (single source, major, minor contributors)

Summary of Results

DNA yields differed between laboratories with Lab 2 and 4 obtaining lower DNA yields than Lab 1 and 3; DNA yields showed a large variability between sampling areas with some recurring trends: low median DNA yields from the external armpit, high median DNA yields from the external breast; Interindividual differences irrespective of sampling location observed; extreme outliers (>100 ng) observed in 5 samples, which cannot be explained by any of the activities reported by the corresponding participants in comparison to other situations; clear interindividual differences not observed for Lab 4; no consistent trend regarding the correlation between log DNA yield and MNC observed for the four participating laboratories; two-person mixtures more frequently observed by Lab 1 and 2, three-person mixtures more frequently observed by Lab 3 and 4; increased MNC observed in profiles from the external back, breast and inner forearm, lower MNCs in in samples from the external armpit and internal collar, possibly due to the way these sampling locations are exposed to/shielded from the surrounding environment; in general, the wearer was mostly detected as the major (51.1%) or only (19.2%) contributor, but in rare cases the wearer was a minor contributor (2.5%) or even excluded (2.5%); profile composition and detection of additional contributors seemed to be dependent on activities performed while wearing; on Working days: mostly mixtures with wearer as major contributor, associates observed in 45 profiles on 22 occasions (avg. 2 areas/garment, mostly inhabitant partner, less frequently work colleague), detection of associates with a description of contact or spending time in a shared environment with that associate on the corresponding day in questionnaires (but several occasions of such contacts did not result in detection of the associate), one extreme finding: partner detected as a major contributor on the back on a garment where hugging that partner had been described approx. 9 h prior to removing the garment, large proportion of profiles with unknown contributors, but never as major or only contributor; on Non-working days: greater variation in profile composition compared to working days, wearer less often observed as major or only contributor, associates observed in 94 profiles on 27 separate occasions (avg. 3.5 areas/garment, mostly inhabiting partner, inhabiting children), on days where associates were observed participants had spent a large part of their day (>3 h) in the shared environment and direct or indirect contact by the associate has been described, 5 cases of an unidentified donor as a single or major contributor (3 cases most likely attributable to inhabiting child where no reference profile was available); for internal sampling areas, the wearer was more likely detected as a single contributor from collars compared to cuffs and more likely detected as a major contributor in mixtures in cuffs compared to collars; collars from shirts more often resulted in single wearer profiles than corresponding neck areas from jumpers/tops; Detailed overview of quantification and profiling outcomes provided in supp. Material

Raised Questions

N/A

Cautionary Remarks

due to the large number of variables considered under realistic conditions, the variables cannot be evaluated independently; folding and packaging of garments may have led to a redistribution of biological material on the garments