A study on the effects of immersion in river water and seawater on blood, saliva, and sperm placed on objects mimicking crime scene exhibits
Journal of the Canadian Society of Forensic Science, 2008
Authors
Journal
Journal of the Canadian Society of Forensic Science
Study Design
Addressed Question
persistence of biological stains on different substrates immersed in river and seawater
Activity Context
Category
Specifications
Variables of Interest
Stringency of Control
Number of Individuals
3
Replicates per Individual and Condition
3
Nucleic Acid
Bodily Origin
Depositor & Contact
Depositor Characteristics
N/A
Criteria for Shedder Status
N/A
Previous Activities
N/A
Contact Scenario
primary deposit of body fluid on substrate - (drying) - stain immersion - recovery by scuba divers - sampling
Primary Substrate
Primary Substrate Type
for blood: filter paper, cotton fabric bed sheet, car door; for saliva: paper handkerchiefs, smoked cigarette butts, plastic bottle necks, chewing gum; sperm: white cotton sheet, condom
Primary Substrate Material
Deposit
deposition of 50 µl of body fluid (for cigarette butts, bottlenecks and chewing gums: regular usage)
Delay
drying (half of the stains)
Secondary Substrate
Secondary Substrate Type
N/A
Secondary Substrate Material
N/A
Secondary Substrate Contact
N/A
Further Transfer
N/A
Sampling
Background DNA on Sampled Surface
Sampling Time
delayed
Persistence
water immersion: 5m depth in a freshwater river (no significant current), 5 m depth in the harbor of Ouistreham (tidal movement and currents), water temperature: 9-12°C; time of immersion: 6 h, 12h, 24h, 2d, 3d, 7d, 3 weeks, 6 weeks, 12 weeks
Sampling Method
direct extraction from substrates using QIAamp DNA minikit protocols
Sampling Area
whole stained area
Laboratory Analysis
Extraction
QIAamp DNA minikit protocols
DNA Quantification
N/A
Input for Profiling
maximum of 19.2 µl template in 25 µl reaction volume (dilution and reamplification if necessary)
Profiling
PowerPlex 16 System and AmpliTaq Gold DNA Polymerase, 32 cycles; ABI Prism 3100 Genetic Analyzer, ABI Prism 3100 Data collection software v 1.1, GeneScan software version 3.7, Genotyper software version 3.7 (threshold: 50 rfu)
Reference Samples
taken from donors
Profile Interpretation and Mixture Analysis
comparison to reference profile and calculation of recovery rate (= allele count of sample/allele count of reference profile x 100)
RNA Data Interpretation
N/A
Results
DNA Quantity
N/A
Profile Quality
mostly full profile from shortly immersed samples, decreased recovery rates with longer immersion times (loss of signal at larger-sized STR products)
Parameter Used for Comparison
recovery rate (= allele count of sample/allele count of reference profile x 100), number of usable profiles (=profiles showing more than 7 loci)
Summary of Results
water immersion leads to DNA degradation over time with the amount of degradation depending on time of immersion, stain type and the nature of the primary substrate; biological fluid: sperm and saliva are more resistant to degradation than blood; primary substrate: fiber-based substrates have a protective effect on the biological fluid, washing-off effects are observable on smooth surfaces (car door), chewing gum has a protective effect despite its smooth surface (possibly acting as a catching hole); state of the stain at immersion: only moderate differences observed between wet and dry stains (limited to a few substrate-stain combinations); type of water: salt water shows a stronger denaturing effect than fresh water;
Raised Questions
getting a better understanding of the DNA degradation process using real-time PCR; increasing STR profile quality using miniSTR kits
Cautionary Remarks
variability of initial deposits not quantified; non-donor alleles not mentioned (thus unclear whether not present or not taken into consideration)